medp_acaau-20110120 Acacia aulacocarpa

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Sequences         28774
Bases          23241074
Minlen              100
Maxlen             7989
Length at Q1        193
Length at Q2        560
Length at Q3       1176
N50                1390
B1000             66.9%
B2000             27.2%

Longest 7989, 7507, 7504, 7472, 7300, 7119, 6993, 6941, 6760, 6680

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Q1, Q2, Q3 are the quartiles of the reported contig lengths. B1000 and B1000
indicate the percentage of bases involved in contigs at least 1000 bp and
2000 bp, respectively.

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contigs.fa
Contigs from assembly, min. 100 bp. Possibly includes UTRs.

peptides.fa
Protein products predicted by ESTScan. Does not necessarily include
initial methionine. Possibly more than one polypeptide per contig.

readcounts/*.dat
Read counts obtained by post hoc alignment of reads to reported contigs,
per sample, via gsnap with default parameters. Tab-delimited columns
with the format

 sample  contig_id  all_aligned  unique_aligned  paired_aligned

where sample indicates the sample, library, tissue, etc.; contig_id is
the contig identifier (e.g., my_species-20111231|1234); all_aligned is the
number of reads aligned to this contig; unique_aligned is the number of
reads that aligned uniquely to this contig; and paired_aligned is the
number of pairs aligned to this contig.

annot/*.dat
Motif similarities obtained by searches against HMM collections.