medp_piman-20110214

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Sequences         37540
Bases          26788743
Minlen              100
Maxlen            12841
Length at Q1        194
Length at Q2        427
Length at Q3        944
N50                1251
B1000             59.8%
B2000             26.4%

Longest 12841, 12350, 12052, 11951, 11715, 11679, 11468, 10676, 9955, 9320

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Q1, Q2, Q3 are the quartiles of the reported contig lengths. B1000 and B1000
indicate the percentage of bases involved in contigs at least 1000 bp and
2000 bp, respectively.

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contigs.fa
Contigs from assembly, min. 100 bp. Possibly includes UTRs.

peptides.fa
Protein products predicted by ESTScan. Does not necessarily include
initial methionine. Possibly more than one polypeptide per contig.

readcounts/*.dat
Read counts obtained by post hoc alignment of reads to reported contigs,
per sample, via gsnap with default parameters. Tab-delimited columns
with the format

 sample  contig_id  all_aligned  unique_aligned  paired_aligned

where sample indicates the sample, library, tissue, etc.; contig_id is
the contig identifier (e.g., my_species-20111231|1234); all_aligned is the
number of reads aligned to this contig; unique_aligned is the number of
reads that aligned uniquely to this contig; and paired_aligned is the
number of pairs aligned to this contig.